General commands:

/assignPlayerFormation - formation commands were removed
/associateDroidControlDeviceWithShip - Associate Droid With Ship
/boosterOff - turns your booster off
/boosterOn - turns your booster on
/boosterToggle - toggle your booster on/off
/bstrike1 - Bomber Strike 1 (Imperial Only)
/bstrike2 - Bomber Strike 2 (Imperial Only)
/bstrike3 - Bomber Strike 3 (Imperial Only)
/closeWings - Close s-foils (if your ship has them)
/comm - communicate with target
/componentDetail - brings up ship component window
/dock - dock with target
/enterFormation - formation commands were removed
/epulse1 - Energy Pulse 1 (Privateer Only)
/epulse2 - Energy Pulse 2 (Privateer Only)
/epulse3 - Energy Pulse 3 (Privateer Only)
/escapePod yes - launches your escape pod
/eshields - Emergency Shields (Alliance Only)
/ethrust - Emergency Thrust (Privateer Only)
/eweapons - Emergency Weapons (Imperial Only)
/iffscramble - IFF Transponder Scramble (Alliance / Privateer)
/insertItemIntoShipComponentSlot - Load Item into Ship
/inspacereload - Underway Replenishment (Alliance Only)
/inspacerepair - In Space Repair (Alliance Only)
/inspacerr - Repair and Replenishment (Alliance Only)
/inspect - Inspect the current target
/installShipComponent - Install Ship Component
/jstart1 - Jump Start 1 (Alliance Only)
/jstart2 - Jump Start 2 (Alliance Only)
/jstart3 - Jump Start 3 (Alliance Only)
/kickFromShip - kick a player from your ship (since grouping change)
/launchCountermeasure - launch a countermeasure (doesn't seem to work)
/launchMissile - launch purple "dummy" missile that does no damage
/leaveFormation - formation commands were removed
/leaveStation - leave your current station (POB ships only)
/lightEngineScramble - ???
/matchSpeed - match speed with your current target
/nblast - Nebula Blast (Imperial Only)
/openCloseWings - toggle s-foils open or closed (if your ship has them)
/openWings - Open s-foils (if your ship has them)
/pilotShip - jump into the pilot's seat without targeting the chair (only works inside the cockpit)
/ptrap1 - Pirate Trap 1 (Privateer Only)
/ptrap2 - Pirate Trap 2 (Privateer Only)
/pumpreactor - Pump Reactor (Imperial Only)
/questJournal - displays your quest journal (may only work in flight if you aren't FS)
/requestSpaceTrainer - calls up the trainer built in to starter ships
/setFormation - formation commands were removed
/setFormationSlot - formation commands were removed
/targetPilot - ???
/taunt (message) - send taunt message to target (doesn't seem to work)
/throttle (0.00-1.00) - set your throttle, 0.00 being no thrust, 1.00 being full thrust, 0.50 being half, etc...
/toggleCombatTaunts - toggle taunts on/off
/ui radarSelect (0-3) - sets radar style
/ui reticleSelect (0-6) - sets reticle style
/unassociateDroidControlDeviceWithShip - Unassociate Droid With Ship
/undock - undock with target
/uninstallShipComponent - Uninstall Ship Component
/unpilotShip - stand from pilot's seat in POB ships
/vrepair - Ship System Emergency Repair (Alliance Only)
/vrepairother - Emergency Repair Other Ship's System (Alliance Only)
/waypointAutopilot - can't get this one to work
/weaponGroupAssignment - opens the weapon group window
/zoneMap - calls up the 3D zone map

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Hyperspace commands:

/aborthyperspace - Stops the current jump. There is a 40 second countdown before you can start another.
/hyperspaceMap - Calls up the galaxy map.
/hyperspace (destination point) - You don't need to include the names, I've just listed them for reference.

/hyperspace space_corellia_0 (Corsec Wing)
/hyperspace space_corellia_1 (Trifecta Star)
/hyperspace space_corellia_2 (Binyare Razorcat)
/hyperspace space_corellia_3 (Corellia's Own)
/hyperspace space_corellia_4 (Talus Secta)

/hyperspace space_dantooine_0 (Dantooine's Wrath)
/hyperspace space_dantooine_1 (Asair's Ribbon)
/hyperspace space_dantooine_2 (Isryn's Veil)
/hyperspace space_dantooine_3 (Gorvera Space)

/hyperspace space_dathomir_0 (Dark Force)
/hyperspace space_dathomir_1 (Empire Blockade)
/hyperspace space_dathomir_2 (Emperor's Hand)
/hyperspace space_dathomir_3 (Dathomir's Vitality)

/hyperspace space_endor_0 (Red Sin Chimaera)
/hyperspace space_endor_1 (Area D-435)
/hyperspace space_endor_2 (Empire's Justice)
/hyperspace space_endor_3 (Durillium Sea)

/hyperspace space_lok_0 (Nym's Hovel)
/hyperspace space_lok_1 (Rebellion Blaze)
/hyperspace space_lok_2 (Lurid Dawn)
/hyperspace space_lok_3 (Voria's Ember)

/hyperspace space_naboo_0 (Royal Way)
/hyperspace space_naboo_1 (Penumbra Omen)
/hyperspace space_naboo_2 (Sea of Veruna)
/hyperspace space_naboo_3 (Kylantha's Whim)

/hyperspace space_tatooine_0 (Miner's Yard)
/hyperspace space_tatooine_1 (Deep Sea)
/hyperspace space_tatooine_2 (Desert Sands)
/hyperspace space_tatooine_3 (Outer Rim)

/hyperspace space_yavin4_0 (Smuggler's Run)
/hyperspace space_yavin4_1 (Ferrous Aurora)
/hyperspace space_yavin4_2 (Crimson Flare)

/hyperspace space_kashyyyk_0 (Neutral Territories)
/hyperspace space_kashyyyk_1 (Avatar Platform)
/hyperspace space_kashyyyk_2 (Imperial Overseers Base)
/hyperspace space_kashyyyk_3 (Rodian Territories)

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Droid commands:

/droid - send your droid a specific command (example: /droid droidcommand_shieldadjustrearfour )
/droid droidcommand_mutedroid (Mute Droid/Flight-Computer - common to all three classes)

/droid droidcommand_shieldadjustfrontfour (Shield Front Adjust - Extreme)
/droid droidcommand_shieldadjustfrontthree (Shield Front Adjust - Heavy)
/droid droidcommand_shieldadjustfronttwo (Shield Front Adjust - Moderate)
/droid droidcommand_shieldadjustfrontone (Shield Front Adjust - Light)
/droid droidcommand_shieldadjustrearfour (Shield Rear Adjust - Extreme)
/droid droidcommand_shieldadjustrearthree (Shield Rear Adjust - Heavy)
/droid droidcommand_shieldadjustreartwo (Shield Rear Adjust - Moderate)
/droid droidcommand_shieldadjustrearone (Shield Rear Adjust - Light)
/droid droidcommand_shieldbacktofronthundred (Shield Front Reinforcement - Extreme)
/droid droidcommand_shieldbacktofronteighty (Shield Front Reinforcement - Heavy)
/droid droidcommand_shieldbacktofrontfifty (Shield Front Reinforcement - Moderate)
/droid droidcommand_shieldbacktofronttwenty (Shield Front Reinforcement - Light)
/droid droidcommand_shieldfronttobackhundred (Shield Rear Reinforcement - Extreme)
/droid droidcommand_shieldfronttobackeighty (Shield Rear Reinforcement - Heavy)
/droid droidcommand_shieldfronttobackfifty (Shield Rear Reinforcement - Moderate)
/droid droidcommand_shieldfronttobacktwenty (Shield Rear Reinforcement - Light)
/droid droidcommand_shieldemergencyfront (Shield Emergency Front)
/droid droidcommand_shieldemergencyrear (Shield Emergency Rear)
/droid droidcommand_shieldnormalize (Shields Normalization)

/droid droidcommand_engineefficiencyfour (Engine Tuning - Four)
/droid droidcommand_engineefficiencythree (Engine Tuning - Three)
/droid droidcommand_engineefficiencytwo (Engine Tuning - Two)
/droid droidcommand_engineefficiencyone (Engine Tuning - One)
/droid droidcommand_engineoverloadfour (Engine Overload - Four)
/droid droidcommand_engineoverloadthree (Engine Overload - Three)
/droid droidcommand_engineoverloadtwo (Engine Overload - Two)
/droid droidcommand_engineoverloadone (Engine Overload - One)
/droid droidcommand_enginenormalize (Engine Equalization)
/droid droidcommand_weaponeffeciencyfour (Weapon Tuning - Four)
/droid droidcommand_weaponeffeciencythree (Weapon Tuning - Three)
/droid droidcommand_weaponeffeciencytwo (Weapon Tuning - Two)
/droid droidcommand_weaponeffeciencyone (Weapon Tuning - One)
/droid droidcommand_weaponoverloadfour (Weapon Overload - Four)
/droid droidcommand_weaponoverloadthree (Weapon Overload - Three)
/droid droidcommand_weaponoverloadtwo (Weapon Overload - Two)
/droid droidcommand_weaponoverloadone (Weapon Overload - One)
/droid droidcommand_weaponnormalize (Weapon Normalization)

/droid droidcommand_reactoroverloadfour (Reactor Overload - Four)
/droid droidcommand_reactoroverloadthree (Reactor Overload - Three)
/droid droidcommand_reactoroverloadtwo (Reactor Overload - Two)
/droid droidcommand_reactoroverloadone (Reactor Overload - One)
/droid droidcommand_reactornormalize (Reactor Stabilization)
/droid droidcommand_weapcappowerupfour (Weapon Capacitor Overcharge - Four)
/droid droidcommand_weapcappowerupthree (Weapon Capacitor Overcharge - Three)
/droid droidcommand_weapcappoweruptwo (Weapon Capacitor Overcharge - Two)
/droid droidcommand_weapcappowerupone (Weapon Capacitor Overcharge - One)
/droid droidcommand_weapcaptoshieldfour (Capacitor to Shield Shunt - Four)
/droid droidcommand_weapcaptoshieldthree (Capacitor to Shield Shunt - Three)
/droid droidcommand_weapcaptoshieldtwo (Capacitor to Shield Shunt - Two)
/droid droidcommand_weapcaptoshieldone (Capacitor to Shield Shunt - One)
/droid droidcommand_weapcapequalize (Weapon Capacitor Reset)

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Chatter commands:

/chatterspeech acceleratetoattack (Accelerate to attack speed.)
/chatterspeech allclear (All clear.)
/chatterspeech allwingsreport (All wings report in.)
/chatterspeech almostthere (Almost there.)
/chatterspeech attackcriticaltarget (Attack the critical target!)
/chatterspeech attackmytarget (Attack my target!)
/chatterspeech attackrun (Get set to make your attack run.)
/chatterspeech cantholdthem (I can't hold them.)
/chatterspeech cantmaneuver (I can't maneuver!)
/chatterspeech cantshakethem (Help! I can't shake them!)
/chatterspeech closeup (Close up formation.)
/chatterspeech defendourtarget (Defend our target.)
/chatterspeech escortcriticaltarget (Escort the critical target.)
/chatterspeech fallback (Fall back! Regroup on the surface.)
/chatterspeech followmylead (Follow my lead.)
/chatterspeech fullthrottle (We're going in full throttle.)
/chatterspeech gothim (Got him!)
/chatterspeech greatgoingkid (Great going, kid!)
/chatterspeech greatshot (Great shot!)
/chatterspeech heavyfire (I'm taking heavy fire!)
/chatterspeech holdthemoff (Just hold them off for a few seconds.)
/chatterspeech imhit (I'm hit!)
/chatterspeech iminrange (I'm in range.)
/chatterspeech imonit (I'm on it.)
/chatterspeech imontheleader (I'm on the leader.)
/chatterspeech iseethem (I see them!)
/chatterspeech itsahit (It's a hit!)
/chatterspeech itsaway (It's away!)
/chatterspeech keepeyesopen (Keep your eyes open.)
/chatterspeech locksfoils (Lock S-foils in attack position.)
/chatterspeech negative (Negative.)
/chatterspeech negativenoimpact (Negative. It just impacted on the surface.)
/chatterspeech onmetight (He's on me tight.)
/chatterspeech outgunned (I'm outgunned here!)
/chatterspeech rendezvous (Rendezvous at my location.)
/chatterspeech reportin (All wings report in.)
/chatterspeech retreat (Retreat!)
/chatterspeech rightwithyou (Right with you.)
/chatterspeech scopesnegative (My scope's negative.)
/chatterspeech stayontarget (Stay on target.)
/chatterspeech targetcoming (Targets coming up!)
/chatterspeech theycamefrombehind (They came from behind.)
/chatterspeech thisisit (This is it!)
/chatterspeech watchcrossfire (Watch that crossfire!)
/chatterspeech watchyourback (Watch your back!)
/chatterspeech watchyourself (Watch yourself!)
/chatterspeech wellstayback (We'll stay back.)
/chatterspeech wholeading (Who's leading this sortie?)
/chatterspeech wookieewin (Let the wookiee win.)
/chatterspeech youreallclearkid (You're all clear, kid.)